F Rosa Rubicondior

Wednesday 8 February 2012

Boring Beetles And Bad Eggs

Xyloborus ferrugineus
Pest and Diseases Image Library, forestryimages.org
Xyleborus ferrugineus is a boring little beetle. So boring in fact that as a juvenile or grub, it spends its time boring into wood. It is a destructive pest in parts of Australia. But at least it lives up to its Latin name, which translates into English as 'rust-coloured wood-borer'.

What makes this interesting though, is the strange and unusual, and maybe unique, way in which these beetles determine their gender.

First a little about gender determination: in most mammals this depends on the X and Y chromosomes and all species are diploid (that is, they all have pairs of chromosomes in their cells, all apart from one set. In female mammals there are always two X chromosomes, paired up like any other set. In males, however, there is one X and one Y chromosome, of which the Y is small.

During egg and sperm production, these pairs of chromosomes are shared out, one of each pair to each egg or sperm respectively so, all eggs, produced by females who only have X chromosomes, will all have just one X chromosome, that is, they are haploid. Sperm produced by males however, will either have an X or a Y chromosome.

During fertilization the chromosomes from a sperm are transferred to the egg to produce the complete normal number of chromosomes again. Depending on whether the sperm had an X or a Y chromosome, the resulting embryo will either be male or female.

For more detail on gender determination, see this article.

So, in mammals and many other animals and plants, gender is determined genetically.

In some insects, plants and animals, however, rather than the presence or absence of one or other of a pair of chromosomes, gender is determined by the presence or absence of a complete set of chromosomes. In many social insects of the hymenoptera order, such as wasps, bees and ants, and in some coleopterans (beetles), all males are haploid (that is they only have one of each chromosome). Females, on the other hand are diploid (that is they have two, in pairs). In these insects, the fertilised female keeps a store of sperms and can 'choose' to fertilise an egg, or not. Unfertilised eggs become males and fertilised eggs become females. This means, of course, that in these species males have no fathers!

Now, where does our boring little beetle fit into all this?

Well, as with several other related beetles, X. ferrugineus gender depends on whether they are haploid or diploid. To produce a diploid female the egg needs to be fertilised by a sperm from a male. However, and this is the magic bit, to produce a male, the egg ALSO needs to be fertilised, though not with a sperm but with a bacterium!

So, male X. ferrugineus all develop from 'bad' eggs and the bacteria live in their developing bodies and are passed to the females along with normal sperm during mating.

So what we have here is an example of parasitism having progressed to symbiosis when both sets of genes have an 'interest' in the same outcome. The genes of both the host and the parasite form a cooperative alliance because both benefit from it. The beetle gets the benefits of sexual reproduction, with gene shuffling, etc, and the bacterium gets a free ride and all the nutrients it wants.

And of course this is possible because, at the basic level, evolution takes place in genes. Where alliances are beneficial to genes, or any other replicators like memes, for that matter, these alliances are to be expected.

For another example of this see my blog Unintelligent Design - Forming Alliances. Plenty of other gene alliances can be found in nature. For example, look how many copies of wild jungle fowl genes can now be found in domestic hens following their alliance with humans. How many sheep would there be now had humans never formed an alliance with them? And what of wheat and other cereal crops which now form vast prairies in some parts of the world?

More pertinent to the human story maybe is to wonder how many humans would there be today had we never formed alliances with wheat, rice, maize, barley, horses, cattle, pigs, etc, etc, etc.

And of course, the wider lesson from nature from the 'selfish gene' is how very often cooperation results in great advantage to both members of the alliance. Indeed, life itself depends on replicators, or genes, forming alliances with other genes even at the simplest prokaryote cell level. At the higher cell level, alliances of prokaryote cells formed eukaryote cells. These in turn formed multicellular organisms which in many cases formed social groups, and societies. And, especially in humans, in alliance with those other replicators, memes, multicellular life formed cooperative groups, social systems, nation states and cooperative national groups like the European Union.

By contrast, competition between genes and especially between alliances of genes, is frequently harmful to both, especially when it results in arms races.

None of this makes any sense as the work of an intelligent designer of course. Why would a single designer come up with so many different ways to determining gender, and why have genders in the first place when parthenogenesis would be so much simpler?

From the perspective of 'selfish' genes, there is no problem at all and no magic involved, though some might find the result magical indeed.

What a wonderful world.





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Tuesday 7 February 2012

A New Angle On Sex For Creationists

Male Angler Fish
The extent to which some males will go for sex is amazing, and this has nothing at all to do with dangly things - only females have these and they use them for fishing.

No, I'm not talking about people but about fish. To be precise, the angler fish, the female of which is an ugly looking thing by any stretch of the imagination and yet strangely beautiful. She spends most of her time fishing but at least she takes her mate along with her.

She fishes by dangling a fleshy lure in front of her huge mouth, and gulping down any fish who mistake it for a meal, showing the fine line that many species tread between getting lunch and becoming lunch.

Whenever she fancies a little bit of activity of the reproductive kind, she has a unique way of turning her mate (or mates, because she's not averse to a little group activity) on. She uses her own hormones. The puny little males consist only of the barest essentials - a pair of gonads attached to the female's side which are regulated by HER hormones.

Now, this may be close to the ideal for some extreme feminists, though the thought of carrying your mate around and catering for their every need, few though those are, may not appeal.

But let's spare a little thought to the male, to whom no sacrifice for his art seems to be too great. When hatched, he can barely feed himself, if at all, but he can swim, has a powerful sense of smell with which he detects the merest whiff of a nearby female, and teeth. If there is no female close enough, he dies as he is incapable of fending for himself.

Using this sense of smell, he locates a female and bites her skin, then secretes an enzyme which dissolves the skin of his own lips so they fuse with the female's body. Their circulations then merge so he gets all his nourishment from her. Needing no digestive system, this atrophies and is absorbed by the female, followed by his heart, brain and then the rest of his body, leaving just his gonads attached to her surface. This is one of the most extreme cases of sexual dimorphism known.

Each female may have several sets of gonads from several males ready for when she needs them. When she feels in the mood, and ready to spawn, she produces a hormone which causes 'her' gonads to produce sperm at the moment she lays her eggs. She never has any need to find a mate. It's like being hermaphrodite, yet has all the advantages of sexual reproduction.

Neat, eh?

Now, a question for creationists. (No, don't run away! It should be easy if your preferred notion is correct and you really believe in it!)

Why would an intelligent designer design this bizarre system for producing more angler fish? Why have males, and this complicated process of partial parasitism, when it could have just created a female with gonads and achieved the same thing?

For an evolutionists of course, there is no problem to be explained here. Self-evidently the mechanism suited the angler fish genes because it produced more angler fish genes. So, with no regard for the individual males, this is what evolution led to. A not very efficient and coldly uncaring, yet highly effective method for producing copies of angler fish genes, just as we would expect.

No mystery, no magic, the most parsimonious answer, and yet another win for the Theory of Evolution.





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Sunday 5 February 2012

Nebraska Man - A Creationist Hoax

'Nebraska Man' as fancifully illustrated by Amédée Forestier
Nebraska Man, like the Piltdown Man Hoax, is actually a vindication of science and not the embarrassment creationists would like it to be.

The facts are as follows:

In 1917, Harold Cook, a rancher and geologist, found a fossil tooth which looked vaguely hominid.

In 1922, Henry Fairfield Osborn prepared a paper on it for the journal Science in which he named the putative owner of the tooth Hesperopithecus haroldcookii. (Ape of the western world - note, ape, not man).

Following its publication, scientist Grafton Elliott Smith wrote an article for a popular magazine, The Illustrated London News, (not a scientific journal). This article was illustrated by Amédée Forestier who, with no scientific justification and despite Osborn's protests, based her illustration on 'Java Man' (Pithecanthropus now renamed Homo erectus).

Osborn declared this illustration "a figment of the imagination of no scientific value, and undoubtedly inaccurate". No scientist had ever coined the term 'Nebraska man' and Osborn had always been careful to avoid making any claim that Hesperopithicus was anything more than an advanced primate of some kind.
I have not stated that Hesperopithecus was either an Ape-man or in the direct line of human ancestry, because I consider it quite possible that we may discover anthropoid apes (Simiidae) with teeth closely imitating those of man (Hominidae), ...

Until we secure more of the dentition, or parts of the skull or of the skeleton, we cannot be certain whether Hesperopithecus is a member of the Simiidae or of the Hominidae.
Osborn 1922
Just as with the Piltdown forgery, jingoistic nationalism became entangled with the science in the popular imagination and America was declared by some to be the place where God has chosen to evolve humans.

Few people, if any, outside America took the find seriously and the scientific world was never more than highly sceptical of the claim. In 1924, George MacCurdy published the two-volume book 'Human Origins' in which he gave Hesperopithecus a mere (and inaccurate) footnote mention with:
In 1920 (sic) Osborn described two (sic) molars from the Pliocene of Nebraska; he attributed these to an anthropoid primate to which he has given the name Hesperopithecus. The teeth are not well preserved, so that the validity of Osborn's determination has not yet been generally accepted.
Eventually, further field work was undertaken at the site of the original find in 1925 and further remains were found which confirmed the scientific scepticism. The tooth was found to be that of an extinct peccary, Prosthenops, of which other remains were found.

Osborn then retracted his paper in 1927, less than five years after it was published and Hesperopithecus haroldcookii. was consigned to the trash-can of science, along with so many other briefly considered then discarded ideas. As is usual with science, a hypothesis had been proposed, the facts were considered, further work was carried out, and the hypothesis was falsified and discarded.

And that would have been that had it not been for Christian evangelical preachers like Hank Hanegraff and Grant Jeffrey, who have seized on 'Nebraska man' to dupe the credulous world of creationism by claiming that it was a failed attempt to dupe people into believing in evolution by dishonest scientists, or at least evidence of how science, especially evolutionary science, is full of mistakes and so should be distrusted.

In fact, 'Nebraska man' illustrates very neatly how science proposes provisional hypotheses, checks the facts and carries out further research if necessary, and then either confirms or falsifies the provisional hypothesis. It also shows how the popular press can take a scientific idea and distort it in the popular imagination, often for profit motives rather than from a desire to inform and educate.

'Nebraska man' also neatly illustrates how creationists seek to mislead their credulous public into misunderstanding any science which would undermine their income and how they will deliberately confuse articles from the popular press with genuine science and will present popular misconceptions as established science.

'Nebraska man' was not, and has never been, a problem for science. 'Nebraska man' is a hoax perpetrated on a gullible creationist public, not by science, but by those who make their living fooling those who are keen and eager to be so duped. Such is the dishonesty of those who make a living from religion and those off whom these people live.

[Later note] A few days after writing this blog, another blogger on atheism and science who blogs under the name 'Plasma Engineer' received this parody of human evolution.

Interestingly, it contains a fanciful drawing of 'Nebraska Man' along with a quite ludicrous drawing of an imaginary chimp-like creature labelled 'Lucy' and an equally notional drawing of 'Piltdown Man' about which I have also recently blogged.

Needless to say, neither these drawings nor this implied sequence in human evolution has ever appeared in any scientific publication and no human evolutionist would present such an idiotic sequence as established scientific fact or even propose it as a hypothesis. It is, as we've come to expect, nothing more than a creationist parody prepared with the clear intention of misleading the credulous and gullible, very probably for commercial gain or political purposes, or both.

It's worth mentioning as an aside, that the 'Cro Magnon' man represented has never been claimed to be ancestral to all modern Homo sapiens. Cro Magnon has only ever been seen as a early European culture of fully modern Homo sapiens. The only difference between Cro Magnon and modern Europeans is their respective levels of technological development.

Note too the white supremacist undertones in the implication that human evolutionary theory puts white Europeans at the end-point. No one but a racist would assume that non-Europeans are less than equally evolved modern Homo sapiens. Indeed, how could it possibly be otherwise?

Clearly there is a racist, white supremacist agenda at work, as well as a clear intent to mislead.





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Piltdown Man - A Triumph For Science.

Rather than being the embarrassment for evolutionary science that creationists like to pretend, the Piltdown Man hoax was actually a triumph for science. Its exposure was an example of how the Theory of Evolution made an accurate prediction which was confirmed by evidence.

An article in today's Observer prompted me to write this. This article goes into some detail about how the 'discovery' came to be made and who the likely hoaxer(s) was(were).

Piltdown's acceptance was probably more to do with jingoistic patriotism than with science but it needs to be seen in the context of the then fairly recent history of evolutionary theory, the way it had been received by the Anglican Church and how it fitted into English political life.

Contrary to what one would expect, the history of Bible literalism is a fairly recent American phenomenon; in the late nineteenth and early twentieth centuries, the Bible was accepted by most Anglican theologians as allegorical. Just as Jesus had used stories or parables to illustrate his points, so too had the early prophets. The creation story in particular was allegorical and few Anglican theologians seriously doubted that evolution was the way God had really created humans.

Saturday 4 February 2012

A Callous And Indifferent God?

Eurasian Wren (Troglodytes troglodytes)
How could a benevolent, all-knowing creator god have created the wren?

Wrens, Troglodytes troglodytes, are one of the smallest British birds, being only marginally larger than our smallest bird, the migratory goldcrest (Regulus regulus). The Eurasian wren inhabits a zone extending from Britain, across Europe and into Iran, Afghanistan and across Central Asia to Japan. Over most of this range, wrens are sedentary.

At the northern extremity of it's range it has to cope with occasional periods of extreme cold such as occurred in Europe and especially Britain in 1963 when our winter weather became Siberian for about 3 months. We are experiencing a period of cold now where the temperature is struggling to get above freezing during the daytime. The wren is one of the smallest warm-blooded animals to survive our winters and yet it doesn't hibernate like some small mammals.

Wrens have a mating ritual which entails males building several nests and then enticing a female to mate and lay eggs in it. She will inspect the nests first and will only choose a mate who has built a nest she finds suitable. Only then is the nest lined and prepared for the brood. She then broods the eggs and tends the young whilst the male goes off to entice another female into another of his nests. This leaves many nests, some of which will not be used for brooding.

So how does the small wren, which because of its small body mass, and consequently a large surface area to mass ratio - meaning it will lose heat very quickly and will need a high metabolic rate to maintain its body temperature - keep warm in these winters?

In normal winters, the old nests from spring and summer are used as roosts. Several wrens will gather together in the same nest, so decreasing their surface area to mass ratio, and so keeping warm.

They do the same thing in these occasional periods of extreme cold. The only problem is that, if too few wrens gather together, or the temperature falls too low, or the nest isn't quite as good an insulator as is needed, very many wrens freeze to death overnight and the population will crash.

As a youngster I lived near the beautiful, and poetically named, River Evenlode in North Oxfordshire, one of the tributaries of the Thames. This river had been diverted at several points when the Oxford to Worcester railway line had been built by the Great Western Railway Company to make it easier to build bridges across it. In one such place in an elm wood, the old river bank was still exposed and formed a sort of shallow over-hang hung with tree roots and wild clematis. I could always guarantee finding several wrens nests under these ledges.

In the summer of 1963, after one of the severest winters on record in the UK, when searching for these nests, I found nest after nest full of mummified bodies of wrens, probably some twenty or thirty dead wrens in all. All of them victims of the winter.

So, how does evolution account for this?

Quite easily. Wrens have evolved a survival strategy which works well enough in most years and which leaves a few survivors even in harsh winters. Even when a local population is wiped out entirely in a single year, as may well have happened in my small elm wood in 1963, sufficient survivors are there in other areas to move into the vacant territory. Wrens also produce several batches consisting of 6-8 eggs in a year so a population can bounce back quickly, especially since food will be plentiful in areas where the population has been reduced.

In this way, the environment and the habits the wren has evolved to cope with it, work well enough together to allow the species (i.e. the wren genes) to survive and to produce more wrens next year. This, of course, takes no account of the suffering and death from cold of the individual wrens. There is no survival value for the genes in evolving mechanism to prevent this altogether, only in as much as it leaves a few gene carriers to carry them into the next generation. Because it works well enough, there is minimal evolutionary pressure to evolve more complicated strategies such as hibernation or a larger body mass.

Interestingly, on the point of a larger body mass, the wrens on St Kilda, a remote North Atlantic island, are measurably larger than the mainland population. The differences are enough for this wren to be given sub-specific status, Troglodytes troglodytes hirtensis.

And of course, the northern limit of the Eurasian wren's range will be determined by a line above which there are no survivors over winter, so a dynamic has been created which will fluctuate a little each year and by a larger amount as climate changes over the long term. The northern limit will always be an area of large-scale occasional population crashes and recovery.

No intelligent, compassionate, loving creator would be this callous and indifferent to the suffering of individuals. Quite clearly, the wren, it's range, its reproductive strategy and its winter survival strategy have all been created by a dynamic and selective environment.

No mystery and no magic required. Evolution by natural selection is again the most parsimonious explanation.





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Thursday 2 February 2012

A Thing Of Beauty

Vincent Van Gogh. Wheat Field with Cypresses at the Haute Galline Near Eygalieres Saint-Rémy - June 1889
As a materialist, one of the accusations often thrown at me is that materialism cannot account for our aesthetic appreciation; of our understanding of beauty. Now, I'm no philistine. One of my enduring passions in life is art, especially impressionism, post-impressionism and modern art. I also get enormous aesthetic pleasure watching wildlife and looking at plants, even the mundane and ordinary. In fact, nothing in this world is really mundane to me. I can see beauty in a pebble, a lichen-covered wall, the roots of a tree, a spider or a beetle.

I also enjoy classical music, especially that of J. S. Bach, Handel, Mozart, Beethoven, Haydn, Elgar and Vaughn Williams, and could listen to the great classical guitarists like André SegoviaJulian Bream or John Williams all day long. Oh how I wish I could play half as well. Although not my favourite piece of classical music, I once totally converted a girl who worked for me to classical music by playing her Pachelbel's Canon in D.

The nave of Winchester Cathedral, England
So what is this sense of aesthetic appreciation? And why do religious people assume they hold a monopoly on it and that somehow it comes from some supernatural being? Presumably, they believe either that they are somehow being told that something or other is beautiful so they believe it is, or they are seeing what they think is their god's work and marvelling at the god rather than the object it supposedly created.

To me, these things debase the object of beauty. Neither of them seem to recognise the inherent beauty of the thing itself. The idea that I should regard this thing as beautiful because I've been told to, or because of who supposedly made it, rather than for what it actually is, is almost abhorrent to me. That's not to say I don't appreciate good craftsmanship of course. I love churches and cathedrals not for their function but for the craftsmanship of, very often ordinary and completely anonymous, craftsmen - the carpenters and stone masons, stained class makers and iconographers - who actually created the place.

A stooping peregrine, a tree, a hunting cheetah, a swimming seal and a diving whale are all things of great beauty and wonder to me and my wonder is no less because I understand a little of how they work and how they came to be what they are; the evolutionary forces and the balance of competition in their environment which selected those best able to compete from amongst their ancestors.

Water Lilies; Claude Monet, 1906 (Art Institute of Chicago)
The sense of peace and relaxation I get from looking at Monet's Water Lilies is no less because I know a little about Monet and how his work developed and the influences on him. I can see the illusion he is creating and admire the skill with which he insinuated the most obvious thing in his painting - the surface of the water - without actually painting it at all. Here is a master craftsman at work; a man who has spent a lifetime honing his skill. I can see that, and I can still see a phenomenally beautiful painting; a painting which works on so many levels and can exert such a powerful influence of those who stand in front of it and yet which is 'just' paint on canvas.

Can we analyse beauty and come up with a universal definition? The Star-spangled banner can inspire most Americans to patriotic fervour, but to a bat it's probably a cacophonous sequence of discords, and to an Englishman, just another national anthem. Beethoven's Ode to Joy is for me the essence of the EU and it stirs something in me for it. The German national anthem is still, after 60 years, a little sinister. Does 'uber ales' really mean 'above all else' or 'over everyone'...?

Audrey Hepburn
The human face is surely one of the strangest of all the mammals with its flatness, receding mouth and silly little triangle sticking out for a nose, yet what a face! What a thing of great beauty! How did Audrey Hepburn, Jean Shrimpton or Mohammed Ali look so good with such unpromising material?

No. We can't define or analyse beauty because it means different things to different people and probably nothing at all to another species, no matter how intelligent. To coin a cliché, beauty is in the eye (or ear) of the beholder.

So where did we get this aestheticism from?

As a materialist, and of course an evolutionist, I know that we must account for it in terms of a benefit conveyed to our ancestors from back in our history, or it is an ability which co-evolved on the back of some other evolving characteristic. Did we evolve our sense of wonder and appreciation along with our intelligence?

Did we become 'hooked' on the endorphin rush we have when we see something beautiful or relaxing? Is it part of our sex-selection where there is a clear survival advantage for our genes in selecting 'beautiful' partners because what we think of as beauty is actually an assessment of good health - symmetry, good muscle structure, curves in the right places, breasts, and yes, genitalia.

Does our appreciation of nature (does everyone have that?) convey a benefit for a hunter-gatherer because it helps us learn and understand nature, the better to find and eat it, and the better to avoid being eaten by it?

Watersmeet, Devon, England
Do we like a scene with water in it - and almost everyone does - because possession of water supply would have been so beneficial to us? What more could we ask for in life than food, shelter, company and a clean (= babbling, trickling) water supply?

We know our aesthetic values are determined to a large extent by our culture and our back-ground. Would Vaughan Williams 'Lark Ascending' mean so much to a Bantu or Inuit? Why do I find the singing voice of a Bollywood actress quite unpleasant and yet it can send someone from Karela or Gujarat into raptures?

You see, even contemplating the possible reasons for our aestheticism opens up more questions and make it more wonderful for a curious mind.

Rainbow Stag Beetle, Phalacrognathus muelleri
Christchurch College, Oxford
The poet Keats once light-heartedly accused Isaac Newton of spoiling the beauty of the rainbow by unweaving it and reducing it to a prism of colours.

Certainly, my atheism has not lessened my love of nature for the great beauty it holds; and that is not diminished in the slightest because I have tried to understand it. Quite the contrary, it has immeasurably enhanced it because the more I learn the more I realise just what a magic world in a magic universe we have the great good fortune to experience for this brief instant of intelligent life that chance has given us.

Perhaps the real beauty of the rainbow lies not in it colours, nor in the way these are split up by rain drops, nor even in the way we see and perceive them.

Perhaps the real beauty of the rainbow lies in understanding why we perceive it as beautiful in the first place.





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Tuesday 31 January 2012

Feel The Love.

When I read this passage from the Christian Bible recently, my first thought was that the author simply got carried away with himself and went on a binge of hatred and spite, thinking of all the things he would like to do to people if only he had the power. One can almost picture the little man (and surely he is an example of small man syndrome), complete with bristling moustache, scribbling furiously away, getting redder and redder in the face.

The passage is from Leviticus 26. I actually still find it hard to read without starting to giggle at the thought of this hate-filled little man. I just hope he didn't make his unfortunate wife and children suffer by playing out his nasty little fantasies for real, though I doubt he would have the courage. One never knows though...

Here goes:

But if ye will not hearken unto me, and will not do all these commandments; And if ye shall despise my statutes, or if your soul abhor my judgments (sic), so that ye will not do all my commandments, but that ye break my covenant:

I also will do this unto you; I will even appoint over you terror, consumption, and the burning ague, that shall consume the eyes, and cause sorrow of heart: and ye shall sow your seed in vain, for your enemies shall eat it. And I will set my face against you, and ye shall be slain before your enemies: they that hate you shall reign over you; and ye shall flee when none pursueth you.

And if ye will not yet for all this hearken unto me, then I will punish you seven times more for your sins. And I will break the pride of your power; and I will make your heaven as iron, and your earth as brass:

And your strength shall be spent in vain: for your land shall not yield her increase, neither shall the trees of the land yield their fruits. And if ye walk contrary unto me, and will not hearken unto me; I will bring seven times more plagues upon you according to your sins.

I will also send wild beasts among you, which shall rob you of your children, and destroy your cattle, and make you few in number; and your high ways shall be desolate. And if ye will not be reformed by me by these things, but will walk contrary unto me; Then will I also walk contrary unto you, and will punish you yet seven times for your sins.

And I will bring a sword upon you, that shall avenge the quarrel of my covenant: and when ye are gathered together within your cities, I will send the pestilence among you; and ye shall be delivered into the hand of the enemy. And when I have broken the staff of your bread, ten women shall bake your bread in one oven, and they shall deliver you your bread again by weight: and ye shall eat, and not be satisfied.

And if ye will not for all this hearken unto me, but walk contrary unto me; Then I will walk contrary unto you also in fury; and I, even I, will chastise you seven times for your sins.

And ye shall eat the flesh of your sons, and the flesh of your daughters shall ye eat. [No! I'm not making this up!]

And I will destroy your high places, and cut down your images, and cast your carcases upon the carcases of your idols, and my soul shall abhor you. And I will make your cities waste, and bring your sanctuaries unto desolation, and I will not smell the savour of your sweet odours.

And I will bring the land into desolation: and your enemies which dwell therein shall be astonished at it. And I will scatter you among the heathen, and will draw out a sword after you: and your land shall be desolate, and your cities waste.

Then shall the land enjoy her sabbaths, as long as it lieth desolate, and ye be in your enemies' land; even then shall the land rest, and enjoy her sabbaths. As long as it lieth desolate it shall rest; because it did not rest in your sabbaths, when ye dwelt upon it.

And upon them that are left alive of you I will send a faintness into their hearts in the lands of their enemies; and the sound of a shaken leaf shall chase them; and they shall flee, as fleeing from a sword; and they shall fall when none pursueth. And they shall fall one upon another, as it were before a sword, when none pursueth: and ye shall have no power to stand before your enemies.

And ye shall perish among the heathen, and the land of your enemies shall eat you up. And they that are left of you shall pine away in their iniquity in your enemies' lands; and also in the iniquities of their fathers shall they pine away with them.

Leviticus 26:14-29 (KJV)

And this was supposed to be a story about something a loving, compassionate god was saying. Obviously it never occurred to the author that this god, if it were real, could (and would, if it really was as described) simply perform some convincing miracle again like it is claimed to have done with Moses and Abraham, and all those earlier prophets to whom it was said to have appeared.

But maybe the author knew that wasn't going to happen. Maybe the author just got carried away as his fantasy got the better of him and all that pent-up aggression and hate came pouring out. Or maybe the author just wrote to order for a boss who wanted to frighten the people into obeying him and used the threat of a god as a proxy. Being technologically backward and superstitious, it was probably easy to use this technique to control the people at whom this was aimed in those days.

Priests and preachers still use this 'persuasive' technique today, of course, and it still seems to work on some people.





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Sunday 29 January 2012

Going, Going...

Source: Churchsociety.org
In what sense of the words is Britain a Christian country?

Post-war Britain has seen a very sharp decline in religion and nowhere is this seen more markedly than in church attendance in the established Anglican church. By 2009, church attendance had fallen to 50% of that of 1968, despite an increase in population.

In 2010, Peter Brierly, former head of Christian Research, told Christians that while in 1998, all but five counties in England had a churchgoing population of at least 6 per cent, today there are only 12 English counties with that figure and there are seven counties with a churchgoing population of less than 4.5 per cent. He predicted that almost all counties would have a churchgoing population of less than 4.5 per cent by 2020.

He also said that while 60 per cent of British people are not in the church, that figure rises to around 80 per cent among the under-15s and around 75 per cent among 15 to 29-year-olds, with 59 per cent of all churches in England having no members between the ages of 15 and 19 He warned that in the 2020s many churchgoers will die out (Source)

Friday 27 January 2012

The Teleological Fallacy or Paley's Broken Watch


One of the favourite fallacies used by creation 'scientists' to give spurious credence to creationism and its fashionable (and very lucrative) version, Intelligent Design, is the argument from design, or the teleological argument.

This argument has a long history but perhaps its most famous exponent was William Paley, the English theologian and philosopher. Briefly, his argument, which pre-dated Darwin's Origin of Species by 57 years, was that, if you found a watch on a piece of heathland, the most logical conclusion would be that someone had dropped it there and that it had been designed by one or more watchmakers and not by natural forces.

And of course, this is unarguable for a watch, for the simple reason that there is no other mechanism which could explain the watch's production, nor how it came to be where it was found. That explanation requires no mystery; there is nothing required which can't be readily understood and certainly there is no need to include an unproven supernatural hypothesis in the explanation. The explanation that a watch was designed by a watchmaker is complete and the most parsimonious answer available.

And, with the state of our knowledge of biology and biological systems in 1802, there seemed to be no reason why this analogy did not apply to living animals as well. Living animals appear to be designed in that they have component parts which need to be arranged in the right way, though, curiously, there are no wheels in nature so any movement has to rely on levers with lots of pushing and pulling, acceleration and deceleration and not the far more efficient rotary action of wheels (imagine a car with legs!) but that's by the by.

Now, what purpose does a living animal have which is in any way comparable to the utility value of a watch? Living things exist only to produce other living things. Not so watches. Watches have a very specific purpose and that is to keep an accurate record of the passage of time.

Thursday 26 January 2012

An Evolving Sense Of Self

It's usually taken as given that a measure of high intelligence, in comparative terms between species, is that only the most intelligent species have a sense of self, in other words, it takes a high level of intellect to have self awareness.

A rather nebulous definition of 'self-awareness' is awareness of your own individuality which is about as useful as defining 'impressionist art' as 'art done by impressionists'.

A standard test of self-awareness used by animal psychologists is the mirror test. This test assumes that the more intelligent an animal is the more likely it will be to identify itself in a mirror. Apparently, all of the African apes, the orang utan and three species of gibbon have all passed the mirror test, and so have bottlenose dolphins, killer whales, elephants and European magpies (a bird of the crow family). All of these are known from other tests to be highly intelligent.

But I have long been suspicious that these test have an inbuilt species bias. They test not for intelligence or self-awareness but how similar the subjects are to humans in respect of the thing being tested.

To understand self-awareness you need to understand how our brains model the world around us and map it into a concept which can be projected into the future. We see cars moving in the street and project them forward in our conceptual model to calculate where they will be in a few seconds time and whether we can safely pull out in front of them, start to cross the road, or need to hurry over. We see other people and take verbal and nonverbal clues from them which we then place in our conceptual model to gauge how they might react to us according to what we do or say next.

And, to complete this model, we must include ourselves as an object in it. It is the awareness of how and where we fit in this model which we call self-awareness. It is our ability to include ourselves and to incorporate our own actions and reactions in our model world which makes us self-aware, and the construction and manipulation of this model is what we call 'consciousness'.

I remember standing outside the place where I worked in Oxford, on the edge of a local nature reserve run by the Berkshire, Buckinghamshire and Oxfordshire Wildlife Trust, which I am proud to support, and watching a grey squirrel travel though a small stand of beech trees. It was obvious the squirrel knew where it wanted to get too and had plotted a route which included frequent jumps across gaps, detours up one branch and down another and occasional pauses as it prepared itself for a particularly long jump.

Clearly, this squirrel had a conceptual model of its environment and had plotted a course through it. It was also clear that it had projected itself into that model and placed itself at each stage through that route. More importantly though, it had originally projected itself forward in its model world to where it wanted to be. I have yet to understand how it could have done that without self-awareness, yet our grey squirrel would probably never pass the mirror test and would be regarded as not especially intelligent.

Not every animal needs to navigate a route through the branches of a stand of trees of course, but many animals, especially predators, need to plan, even to chase down their prey. Simply to walk across the ground they need to 'know' where they want to get to. In Corfu I have also watched a snake, which I've never been able to identify as I didn't have a camera with me, hunting along the banks of a small stream, clearly looking for frogs and voles, and very clearly acting with purpose as it swam back and forth, working first one bank then the other and gradually working up the stream. I really don't see how it could have done this without a conscious sense of purpose and without placing itself in a conceptual model of its world, if only to swim across the stream.

During my life-time our idea of intelligence in other animal, especially mammals and birds, has changed. I remember when we took it as read that humans were the only thinking animals - our scientific name Homo sapiens means 'man who thinks' as though nothing else does. This was taken as a sign that we were a special 'creation'; somehow different in a material way to other animals which was, naturally, 'evidence' that we were somewhere between the angels and the rest of 'creation' with no doubt at all that the world was created especially for us.

We were, of course mistaken, as you would expect of an idea based on nothing more substantial than superstitions, which are themselves merely the projection of our anthropocentric arrogance onto our conceptual model of the universe, and of the assumption that the 'self' we include in our model is another entity which lives in our body and watches the world for us through the windows we call eyes; that reification we call a 'soul' which earlier superstitions had mistaken for consciousness.

Stories began to emerge from detailed studies of wild chimpanzees that they could make tools and practiced subterfuge - which needs self-awareness AND empathy with other chimps.  It was then recognised that all the great apes had a high level of intelligence and were self-aware.  Then marine biologists discovered that dolphins, including killer whales, were also highly intelligent. Some even claimed they may be MORE intelligent that humans. Certainly they seem to have a complex language which has so far defied human understanding.

Laboratory tests showed that rats can quickly learn their way through a maze, that some birds can solve puzzles and even fashion tools.

When milk started to be delivered to our doorsteps in foil-covered bottles, several species of bird, including blue and great tits, blackbirds, magpies and jackdaws all learned to open them to get the cream. This behaviour was mapped and was found to radiate out from centres where it started, showing that learning by observation was taking place. How can a bird learn if it has no sense of self? Why would it realise that if it does what that other bird is doing, it will get cream, if it had no self-awareness.

In parts of the United States there has been a kind of arms race between householders and raccoons which have learned to open trash cans. As more elaborate methods have been used to keep them out, so raccoons have learned to overcome them. In the UK, if you still put bin-bags out and haven't been wheely-binned yet, don't blame the local dogs, cats and foxes for them being ripped open and the contents scattered; in the summer, it's just as likely to have been hedgehogs! And why not? The contents of pet-food tins and pieces of pizza are just as filling as slugs, snails, earthworms and woodlice.

Look closely!
And so gradually, another cherished myth given to us by religion and which has so badly damaged our view of the natural world and our position within and part of it, has been eroded by science and has now all but gone. Very clearly, other animals have consciousness and a sense of self.

Man is a unique species without doubt, which is why, like all other species, science gives us a unique classification, and so we have features which make us unique, but having consciousness and a sense of self-awareness are not amongst them. Nor is intelligence per se, though we may have an especially well-developed form of it, just as elephants have an especially well-developed nose, though no one would give them semi-divine status because of it, save perhaps a superstitious elephant.

The observable facts once again fail to support the notion that Man is the special creation of a god and not just another evolved mammal. All the evidence supports the theory that man is the product of evolution with common descent and has a body plan which is a 'merely' a variation on the basic mammalian theme.





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Science and Religion. Pity the Poor Theologians.

Just came across this paragraph in "Science and Religion. A Very Short Introduction" by Thomas Dixon.

Pity the poor theologians! They are faced with a seemingly impossible dilemma when it comes to making sense of divine actions in the world. If they affirm that God does act through miraculous interventions in nature, then they must explain why God acts on these occasions but not on numerous others; why miracles are so poorly attested; and how they are supposed to be compatible with our scientific understanding of the universe. On the other hand, if they deny that God acts through special miraculous interventions, then they are left with a faith which seems to be little more than Deism - the belief that God created the universe but is no longer active within it. If God is real, should we not expect to be able to discern at least some special divine acts? The theologian seems to have chosen between a capricious, wonder-working, tinkering God and an absent, uninterested, undetectable one. Neither sounds like a suitable object for love and worship.

Dixon, Thomas; Science and Religion. A Very Short Introduction, IBSN 978-0-19-929551-7.

Well, quite!

So, theists, which is it? Is your god a wonder-working, capricious, tinkering god, or an absent, uninterested and undetectable one?

Or, which makes far more sense, and removes any need for inventive mental contortions and logical absurdities, is it just a non-existent one?

(Incidentally, if you wish to buy this book from Amazon and do so through this blog site, any commission I get will go to Oxfam to help ameliorate some of the appalling conditions in which people live and die in this world, with or without its interventionist/non-interventionist/absent gods)





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Wednesday 25 January 2012

Not Good With God

So you thought religion was a GOOD thing?

Infant mortality, homicide, income inequality, child well-being, prison population. All adversely affected by belief in god(s).

Oh! And of course, the more religious a society is, the less likely the people are to accept science, especially evolution.

Friday 20 January 2012

Christians For Genocide - Again

In an astonishing development, and apparently stung by the success of the Atheist Humanist community in exposing the repugnant views of Christian apologist, William Lane Craig, he has launched a counter-attack, and has promptly dug himself even deeper into the hole he created for himself earlier. One wonders if it's kind to keep handing him a bigger shovel.

I have blogged previously on this here, here and here.

To recap:

William Lane Craig originally sought to gain academic respectability by trying to share a platform with leading Atheist, Humanist and evolutionary biologist, Richard Dawkins to debate the existence of gods. Dawkins refused to share a platform with a person who had previously sought to defend the Canaanite genocide and child murder as described in the Bible, and had said so in a Guardian article.

Unbelievably, Lane Craig had explained that:
  • Genocide is not wrong if you believe a god has ordered it. In fact you have a moral duty to carry it out.
  • Child murder is not wrong because it makes them happy.
The only problem he had with the biblical story was the traumatic effect having to murder women and children might have had on the poor soldiers who had had to do the killing. No! Honestly!

The article in which he 'explained' this can be read here

Where Creationists Get Confused.

Darwin's sketch of part of the tree of life
Creationists, either disingenuously, or because of genuine ignorance, seem to have missed the whole point of taxonomy, so they continually make idiotic mistakes which, even though they might imagine them to be valid arguments against evolution, are recognised by those who understand the subject as evidence only of their ignorance. And, with so much information readily and freely available, this ignorance can ONLY be either deliberate or feigned. No one remotely interested in the subject has any excuse for their level of ignorance.

The point of taxonomy is to classify all organisms into a hierarchical system of relationships starting at the lowest level and working up through various levels of increasingly close relationships, ending with recognised and defined sub-species and varieties. These classifications are as man-made as are the political boundaries on maps. Simply drawing a line on a map does nothing to the land either side of that line. The geology itself is completely unaware of the line and feels no compulsion to conform to it.

Species are defined in broadly utilitarian terms and often it's a matter of differing opinion about whether this population or that is actually a distinct species, a sub-species, or a variety, and sometimes it's not clear even into which genus a species should be placed. This is even more complicated with plants where hybridization, environmental variants and polyploid varieties are common, especially in some families.

But the point is that it is humans who make these 'rules' of classification and create the groups into which we fit individual species.

Additionally, the rules were originally devised to classify living species. Life was seen as a hierarchy forming a tree-like structure with living species forming the terminal twigs of branches which were themselves branches of main boughs, all branching off a main trunk. In reality, of course, this tree is still growing and has always been growing.

Moreover, many branches don't arise abruptly but gradually diverge from each other, as we can see from the many examples of ring species and clines, so that, if we were to cut a cross-section of branch at any point in its development at different times and tried to classify it, we would see different degrees of divergence, decreasing as we go back in time and increasing as we come forward so that it would become increasingly difficult and meaningless to force any branch into one of the modern classifications. The only solution might be to create a new species into which to place it or give it a sub-specific or varietal status of its own.

If we could visualise the entire tree of life, we would see divergence occurring followed sometimes by re-uniting in some branches, or even one branch meeting and fusing with a near-neighbour. This could happen if populations of a species become isolated for a while and begin to diverge into different races, then come back into contact and interbreed freely to form a single race again, as is happening with homo sapiens today.

So, not only is classification a man-made concept with rules to which nature was not party and feels no obligation to conform but it becomes even more meaningless when used to classify earlier forms of an evolving species. Nature does not read the rule book!

This is why we can laugh at creationists when they come out with such ignorant statements about micro- and macro-evolution and get so confused about classification of ancestral forms of modern species and the supposed lack of transitional forms between a pair of randomly chosen modern species which no one in their right minds would ever expect to see because no one in their right mind would ever imagine evolved into one or the other, or between an ancestral form given the status of a distinct species and a modern form given a different one.

Of course, we can understand those under-educated simpletons who get so confused about this aspect of biology because they simply lack the ability to think for themselves. What is unforgivable is those educated pseudo-creationists (how do they know what to lie about if they don't know the truth?) who make a handsome living out of maintaining this ignorance in their target victims and supplying them with the necessary misinformation with which to pretend to know as much about biology as those who actually do, without going to the trouble of learning any.

Even more unforgivable are those who assiduously maintain their own ignorance by refusing to read anything, like this blog, which might cause them to abandon their cherished beliefs, for these are the people who are quite deliberately and consciously fooling themselves into believing what they know to be false. These will be the ones who are constantly asking what they like to think are the 'killer knock-down' questions of biologists and who then ignore the answers and ask the same questions again next week. You only need to read their sanctimonious condescension and pretence to have greater knowledge than the scientists who spend years learning and researching the subject, to see what they are getting out of their intellectual dishonesty.

I wonder if they really believe they are fooling their imaginary god by being dishonest even with themselves. No one who believes they are being watched over by an omniscient god of truth and honesty who knows our very thoughts, could conceivably believe it is being fooled by dishonesty.  If this god really existed, it would be as ashamed of them as they should be of themselves.

I suppose the parasitic meme of theophobia can induce all sorts of strange irrationality in its sufferers. Once one sets off down the path of irrational belief, all manner of irrationality becomes possible, even essential, to maintain the delusion. Maybe we shouldn't expect anything better from it's victims.





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Wednesday 18 January 2012

Why You?

Orange and Yellow, Mark Rothko
Like the Anthropic Principle, the deeper you look into it the more you understand.
You are one of the lucky ones because you are alive. You are special. You are unique in the history of the cosmos; so is everyone else, and every other living thing. None of us has existed before and we never will again. Of all the possible humans and all the possible forms of life, only a very tiny fraction will actually exist.

Why can we say this?

Because the process of producing a new individual ensures that the genes get shuffled and there are far more possible combinations of genes than there are humans alive now or have ever been alive, so the chances of producing exactly you, of all the trillions of possible humans, is almost vanishingly small.

And yet, given the nature of human reproduction, once the conditions for one of several million sperm finding and fertilizing an ovum had been created, the likelihood of producing a human being was highly likely. The only thing that was unpredictable was exactly what hand of genes that individual would be dealt by the process.

Monday 16 January 2012

Easter - Conspiracy or Cock-up?

If we are to believe the Bible, and apparently some still do, we are supposed to believe that the Jesus story was all part of a divine plan. According to whoever wrote the chapter attributed to 'John',

God so loved the world, that he gave his only begotten son that whomsoever believeth in him should not perish, but have everlasting life.

John 3:16

So, the whole thing was planned. God intended for Jesus to be put on trial, condemned to death and executed because, for some reason, in some inexplicable way, this was going to save the world, or at least those who believed the story.

Leaving aside the whys and wherefores of that plan and what passes for the rational thinking behind it, how does the rest of the story stack up in view of it?

Let's just recap the main points:
  • Jesus came to Jerusalem, apparently knowing everything that was going to happen and that the whole thing was planned.
  • He had to be identified to the Roman soldiers by Judas.
  • Simon Barjona, aka Simon Peter, whom Jesus earlier had named as the 'Rock upon which I build my church', then lashes out with a sword and cuts off a centurion's ear.
  • Jesus has to intervene in the fracas and tells Peter off. For some reason, Peter isn't arrested for the assault.
  • Judas is then ostracised by the group and is so mortified by guilt that he tops himself. Jesus does nothing to stop this.

So, if the whole thing was planned, which of Judas and Peter ensured the plan worked?

Clearly, Judas. Peter tried to put a stop to the plan to 'save the world'. Yet we see poor old Judas treated as a pariah and no one lifts a finger to explain to him that he was a key player in the game; that he had ensured the world got saved. And yet Jesus stands by, supposedly fully aware that Judas was just playing out his predestined role, consciously or otherwise, and lets him go down in history as the archetypal traitor; next to Satan, probably the most hated figure in Christendom.

And Peter, who was so badly off message he was in danger of wrecking the whole scheme, is still the 'Rock'; Jesus's chosen successor.

Finally, Jesus himself, if the scribes who wrote the chapters ascribed to Matthew and Mark are to be believed, lost the plot at the end and thought God had forsaken him. Strange that, for the person who was supposedly god himself, but moving on...

Does that stack up to you? Does that sound like a well-managed master plan being run by an omniscient master planner and inerrant judge of character?

It sounds to me more like the plot of a Keystone Cops movie. Either that, or the scribes who wrote this stuff weren't capable of putting a coherent story together and probably never fully understood themselves the story they were supposed to be telling. I suppose the ability to write in those days was no more a guarantee of the ability to think rationally than it is today.

And to think, people kill other people for not believing this stuff, and claim the right to interfere in all aspects of our lives because they do. Should we blame the Bible's authors for the stuff they wrote, when they were probably only doing their best, or should we blame the unthinking and credulous people who believe their nonsense?







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Saturday 14 January 2012

Ring Species - Evolution in Progress

The natural phenomenon of rings species presents another major problem for creationism, which requires its supporters to believe that there are no transitional forms and that speciation has never been observed. Ring species refute both these notions and so deliver a fatal blow to notions requiring them to be true.

Ring species can be found where a complex of species, sub-species and closely related members of the same genus exist over a large range and where various local varieties or subspecies have evolved to suit local conditions or to adapt to opportunities in local ecological niches. They are a special form of the phenomenon known to biology as a cline, which is where a species gradually changes across a wide geographical range so that an expert can generally recognise roughly where a specimen was from. We see this in many species, especially insects, birds, plants and some mammals. A ring species is a cline where the ends of the range meet to form a ring.

A few examples should illustrate this but a search on Google will yield several more examples.

Friday 13 January 2012

Something Fishy About Creationism

East African Lakes
The lakes of East Africa with their diverse populations of a group of related species of cichlid fish provide a superb example of radiating evolution over a very short time scale and so are a major problem for creationism. These fish represent an aquatic version of Darwin's finches, and are, if anything, an even more dramatic example of the way new species arise by evolving into new ecological niches and an example of the very short time-scale over which this can occur. See The root of the East African cichlid radiations.

First a little about the lakes and their geology:

Between 17,000 and 16,000 years ago, towards the end of the last Ice Age, there was a surge of icebergs and glacial meltwater into the North Atlantic which altered ocean currents and changed the weather pattern over the African and Asian monsoon areas, which experienced a resulting mega-drought. Analysis of sediments show that this caused Lake Victoria, Lake Albert and Lake Tana to dry up and disappear.

A similar event 14,000 - 15,000 years ago caused Lake Victoria to dry up again and a subsequent lowering of water levels 5,000 years ago left a small satellite lake, Lake Nabugabo, isolated. So, from this we know how long ago each lake received its founding population of cichlids from their feeder rivers. In the case of Lake Victoria, this was between 14,000 and 15,000 years ago. We also know that the micro-lake, Lake Nabugabo, has been isolated for just 5,000 years. By contrast, nearby Lake Tanganyika is tens of millions of years old and has remained filled for all that time. See AfricaPaleo - FOCUS 1: Lake levels and evolution.
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